Usage
To start using Neurofitter to fit the parameters of a neuron model, one has to:
- Adapt the model code, so that it can interface with Neurofitter
- Create an XML file, containing the settings for Neurofitter
- Run Neurofitter from the shell using the command "neurofitter settings.xml"
MPI
Running Neurofitter on a cluster computer using MPI is more complicated.
The user also needs to create job script that
can be submitted to the cluster queueing system.
This script should:
- Copy all the necessary file to the scratch directories on the cluster nodes
- Launch Neurofitter using 'mpirun Neurofitter settings.xml'
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