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To start using Neurofitter to fit the parameters of a neuron model, one has to:

  1. Adapt the model code, so that it can interface with Neurofitter
  2. Create an XML file, containing the settings for Neurofitter
  3. Run Neurofitter from the shell using the command "neurofitter settings.xml"


Running Neurofitter on a cluster computer using MPI is more complicated.
The user also needs to create job script that can be submitted to the cluster queueing system.
This script should:

  1. Copy all the necessary file to the scratch directories on the cluster nodes
  2. Launch Neurofitter using 'mpirun Neurofitter settings.xml'